Regarding the plugin opening the list for all runways, your settings file had "List_Outbound=*,1,100,800". That specifies all lists to be opened, so that part was working correctly. To open the lists only for active departure runways, change the bolded 1 to 2 instead.
For the crash, I have not been able to reproduce it (I've tried opening the lists both using the setting you had and manually, but in both cases I've been able to close the lists without a crash). Is there some specific sequence of steps you can think of that need to be done to trigger it, or is it supposed to happen every time when closing the lists?